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WPDB Database Loader 2.0

The Protein Data Bank Through Microsoft Windows .


Last Week downloads: 0
Total downloads: 108
  • Last Updated: Mar 5, 2011
  • License: Freeware Free
  • OS: Windows XP/2000/98
  • Requirements: No special requirements

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For WPDB Database Loader 2.0Publisher's description


WPDB Database Loader is a Photo & Image software developed by Ilya Shindyalov & Phil Bourne. After our trial and test, the software is proved to be official, secure and free. Here is the official description for WPDB Database Loader:

EditByBSEditor: The PDB through Microsoft Windows, or WPDB for short, is a Microsoft Windows 3.1 Windows95 and Windows NT (client and server) based program to interrogate the 3-dimensional structure of biological macromolecules as found in the Protein Data Bank (PDB) using query and display tools like those shown above.


1. Find structures based on text and sequences searches (mismatches allowed).
2. Sequence alignment of one register sequence against multiple target sequences according to the method of Needleman and Wunsch (JMB 48(3): 443-453, 1970).
3. Structure superposition using Calpha positions according to the method of Hendrickson (Acta Cryst. A35:158-163, 1979 .
4. Secondary structure assignments according to the method of Kabsch and Sander.
5. Amino Acid property profile Analysis, both static and dynamic: static according to the values compiled by Bogardt et al.; dynamic, mean exposure according to Lee and Richards (JMB 55:379-400, 1971) and experimental B factors. Profiles for a single polypeptide chain or difference profiles for two aligned polypeptide chains may be examined.

1.Data compression -- about a 20-fold reduction in storage over the PDB ASCII file distribution, but with: (i) bibliographic information limited to AUTHOR and JRNL records; (ii) optionally the first or all members of an ensemble of NMR or model structures included; (iii) only the first alternative conformation as defined in the PDB file for parts of a crystal structure with partial occupancies; (iv) Atomic coordinates rounded to 2 and not 3 Decimal places; (v) no PDB REMARK records.
2.Interoperable display objects -- when a feature is selected in one display object (e.g. a contact map), all other visible display objects (e.g. 3-D viewer) and those invoked subsequently, are also updated to illustrate that feature.
3.Direct access to Raswin the popular molecular display program.
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