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A Java lightweight component and applet for drawing the RNA secondary structure.


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For VARNA 3.7Publisher's description


VARNA is a Photo & Image software developed by Kevin Darty,Alain Denise. After our trial and test, the software is proved to be official, secure and free. Here is the official description for VARNA:

BSEditor: VARNA is Java lightweight Applet dedicated to drawing the secondary structure of RNA. It is also a Swing component that can be very easily included in an existing Java code working with RNA secondary structure to provide a fast and interactive visualization.

Being free of fancy external Library dependency and/or network access, the VARNA Applet can be used as a base for a standalone applet. It looks reasonably good and scales up or down nicely to ADAPT to the space available on a web PaGE, thanks to the anti-aliasing drawing primitives of Swing.


*Automatically scaled, anti-aliased smooth rendering
*Support provided for input files in BPSEQ, CT, Vienna (DBN: dot bracket notation) or RNAML formats
*Export of snapshots in vector and bitmap picture formats: EPS, SVG, XFIG, JPG, or PNG.
*Fully-customizable, through a documented API for the component, or a set of documented ""-type options for the Applet version
*Platform and browser iNdependence (Only requires the installation of a version 1.5 of the Java plugin
*Support of non-canonical basepairs using the Leontis/Westhof nomenclature. Pseudoknotted structures are processed by first extracting a maximal planar subset of canonical base-pairs, draw the subset and use it as a scaffold for the rest of the base pairings.
*Provides real time user interaction and full display customization.
*Displays multiple secondary structures on a single Applet, saving precious computational ressources.
*Supports semi-automated annotation of individual structural parts, color maps and chemical-probing style of annotations.
you can free download VARNA 3.7 now.


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