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TreeRot 3.0

TreeRot aids in the determination of decay or Bremer support indices.


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For TreeRot 3.0Publisher's description


TreeRot is a Photo & Image software developed by Michael D. Sorenson & Eric A. Franzosa. After our trial and test, the software is proved to be official, secure and free. Here is the official description for TreeRot:

EditByBSEditor: TreeRot aids in the determination of decay or Bremer support indices (Bremer 1988) by generating a command file for PAUP or PAUP* (Swofford 1993, 2002). The command file includes 1) a constraint statement for each node in a given shortest or strict consensus tree and 2) commands to search for trees inconsistent with each of these constraint Statements in turn.

New Features:

1.) TreeRot.v3 has been recoded in Perl and should Now run on any operating system!
2.) TreeRot.v3 provides added functionality in the context of partitioned analyses (see Lambkin et al. 2002).
3). TreeRot.v3 outputs decay indices embedded in a NEXUS format tree for easy viewing in FigTree.
4.) TreeRot.v2 includes an option to generate the commands needed to calculate "partitioned" Bremer support (Baker & DeSalle 1997, Baker et al. 1998).
5.) TreeRot.v2 parses the PAUP log file and automatically calculates decay indices.
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