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OPSM Miner 2.0

The code style & performance is cataclysmic.

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Last Week downloads: 0
Total downloads: 79
  • Last Updated: Dec 30, 2010
  • License: Freeware Free
  • OS: Windows 7/Vista/XP/2000
  • Requirements: No special requirements
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For OPSM Miner 2.0Publisher's description

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OPSM Miner is a Development software developed by Shporer. After our trial and test, the software is proved to be official, secure and free. Here is the official description for OPSM Miner:

BSEditor: OPSM Miner & information project
Note: The code style & performance is cataclysmic - wrote it in 2003-2004 as one of works in C# and it looks and feels that way.

Input:
--
Tab delimitted ASCII file. Rows are tissues, columns are gene expressions. A row may contain a header column & their could be a header row. In ANY case the number of columns should be equal on all rows.
A header row & column may contain any string, all other values must contain numbers.
Matrix size is T (tissues) x G (gene expressions).

Algorithms & flags:
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The Algorithm is performing DFS vertical compare, which mean two gene expressions are compared.
* "Use in-core dual compare" - pre-build all pairs of expressions vectors, this would take GxGxT size in memory so make sure it can fit the memory.
* "Support" - The number of tissues that contains a pattern. Set the application support for this Minimal number of tissues you want to contain the pattern you are seeking. Setting a very high number will yield very few patterns, very low number - and the mining might not finish (exponencial number of patterns).
* "Min Length", "Max Length" - The patterns size you are looking for. Set "Min Length" so the application will not return very short and not interesting patterns. Set "Max Length" to reduce running time.
* "Max Errors" - Only for OPSM with Errors. OPSM searches for exact patterns. OPSM with Errors count a tissue even if it contains an X number of genes that does not fit the pattern.
* "Max Group Len" - for OPSM with groups, the pattern is compared between groups of genes instead of single genes. For example the pattern will be: (0.4 0.6 0.4) (0.7 0.8) (0.9 0.95)
* "Max Layer Diff" - Don't remember...
you can free download OPSM Miner 2.0 now.

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Please be aware that Brothersoft do not supply any crack, patches, serial numbers or keygen for OPSM Miner,and please consult directly with program authors for any problem with OPSM Miner.