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mreps 2.5

Identifying serial repeats (usually called tandem repeats) in DNA sequences.


Last Week downloads: 0
Total downloads: 88
  • Last Updated: Aug 30, 2011
  • License: GPL Free
  • OS: Windows XP/2000/98
  • Requirements: No special requirements

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For mreps 2.5Publisher's description


mreps is a Photo & Image software developed by Bonsai Bioinformatics. After our trial and test, the software is proved to be official, secure and free. Here is the official description for mreps:

mreps is a flexible and efficient software for identifying serial repeats (usually called tandem repeats) in DNA sequences.

mreps is based on a mixed combinatorial/heuristic paradigm. The core of mreps is constituted by exhaustive combinatorial algorithms (described in [2,3]) used to find all repeats verifying certain mathematical properties. This insures the exhaustivity of the approach. Those repeats are then submitted to an heuristic treatment in order to obtain more biologically relevant representation of the repeats.

mreps has a resolution parameter that allows to compute "fuzzy" repeats. In metaphoric terms, this parameter plays the role of "magnifying glass" allowing to "zoom out" the genomic sequence in order to compute more loose repeats.
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