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Jalview 2.7

A multiple alignment editor written in Java

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Last Week downloads: 0
Total downloads: 156
  • Last Updated: Dec 22, 2011
  • License: Freeware Free
  • OS: Windows 7/Vista/XP
  • Requirements: No special requirements
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For Jalview 2.7Publisher's description

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Jalview is a Photo & Image software developed by Macquarie University. After our trial and test, the software is proved to be official, secure and free. Here is the official description for Jalview:

EditByBSEditor: Jalview is used widely in a variety of web pages but is available as a general purpose alignment editor.

Jalview was designed using the Jav aprogramming language and can function on multiple platforms.

Here are some key features of "Jalview":

· Viewing
· Reads and writes alignments in a variety of formats (Fasta, PFAM, MSF, Clustal, BLC, PIR)
· Save alignments and associated trees in Jalview XML format.
· Editing
· Gaps can be inserted/deleted using the mouse or keyboard.
· Group editing (insertion deletion of gaps in groups of sequences).
· Removal of gapped columns.
· Analysis
· Align sequences using Web Services (Clustal, Muscle...)
· Amino Acid conservation analysis Similar to that of AMAS.
· Alignment sorting options (by name, tree order, percent identity, group).
· UPGMA and NJ trees calculated and drawn based on percent identity distances.
· Sequence clustering using principal component analysis.
· Removal of redundant sequences.
· Smith Waterman pairwise alignment of selected sequences.
· Annotation
· Use web based secondary structure Prediction programs (JNet).
· User predefined or custom colour schemes to colour alignments or groups.
· Sequence feature retrieval and display on the alignment.
· Publishing
· Print your alignment with colours and annotations.
· Create HTML pages.
· Output alignment as portable network graphics image (PNG).
· Output alignment as encapsulated postscript file (EPS).
you can free download Jalview 2.7 now.

Statement

Please be aware that Brothersoft do not supply any crack, patches, serial numbers or keygen for Jalview,and please consult directly with program authors for any problem with Jalview.