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GA Fuzzy Clustering 1.0

A clustering tool for microarray data


Last Week downloads: 0
Total downloads: 109
  • Last Updated: Dec 20, 2011
  • License: Freeware Free
  • OS: Windows 7/Vista/XP
  • Requirements: No special requirements

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For GA Fuzzy Clustering 1.0Publisher's description


GA Fuzzy Clustering is a Photo & Image software developed by BioRainbow Group. After our trial and test, the software is proved to be official, secure and free. Here is the official description for GA Fuzzy Clustering:

BSEditor: The GA Fuzzy Clustering application was developed to be a program that uses Combination of Genetic Algorithm and C-Means method for clustering of microarray data and distance matrix data.

Input file format::
- This program uses a Plain Text file as input.
- All the data items must be separated by tabulators.
- No missing values are allowed.

- First line contains names of all columns.
- Each line (beginning with second) must have the gene name (1 column or more) and the expression values for each condition.

Distance matrix:
- First line contains caption (single word or a string in the 1st Position)
and names of elements
- Each line (beginning with second) must contain name of element (the same, as in the corresponding column) and values of distances between this element and the others.
- Matrix is symmetric.
- All values are normalized (not greater than 1.0).
- Note: similarity matrix is also allowed.

Output file format:
- Parameters of the algorithm
- Distribution of genes in clusters (if Membership is > 1/nuberOfClusters)
- Membership matrix for all genes
- Coordinates of centers of clusters (in the gene expression units)
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