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A distance based tandem duplication tree reconstruction algorithm


Last Week downloads: 0
Total downloads: 83
  • Last Updated: Jan 10, 2012
  • License: Freeware Free
  • OS: Windows 7/Vista/XP
  • Requirements: No special requirements

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For DTscore Publisher's description


DTscore is a Photo & Image software developed by Unknown Publisher. After our trial and test, the software is proved to be official, secure and free. Here is the official description for DTscore:

Edit By BS Editor: DTscore application was developed to be a distance based tandem duplication tree Reconstruction Algorithm. It is based on a simple tandem duplication model, which assumes unequal recombination (CrossOver) as the only duplication mechanism.

All it takes as input is a distance matrix between copies. In this matrix, the rows and columns need to be ordered in the same way as the copies are ordered on the locus. DTscore can be applied to relatively large datasets (more than a hundred copies).

Distances can be calculated using programs such as DNADIST (nucleotide sequences) or PROTDIST (protein sequences) from the PHYLIP package. Heterogeneous rates of substitution among sites can be dealt with using the GAMMA method, for example.
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