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RNA structure inference.


Last Week downloads: 0
Total downloads: 92
  • Last Updated: Aug 30, 2011
  • License: Freeware Free
  • OS: Windows XP/2000/98
  • Requirements: No special requirements

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For carnac Publisher's description


carnac is a Photo & Image software developed by Bonsai Bioinformatics. After our trial and test, the software is proved to be official, secure and free. Here is the official description for carnac:

BrothersoftEditor: Carnac is a software tool for analysing the hypothetical secondary structure of a family of homologous RNA. It aims at predicting if the sequences actually share a common secondary structure. When this structure exists, Carnac is then able to correctly recover a large amount of the folded stems.

The input is a set of single-stranded RNA sequences that need not to be aligned. The folding strategy relies on a thermodynamic model with energy minimization. It combines information coming from locally conserved elements of the primary structure and mutual information between sequences with covariations too.
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